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To cite PDB-Tools, please refer to:

  1. Jiménez-García B, Rodrigues JPGLM, Teixeira JMC, Trellet M and Bonvin AMJJ. "PDB-Tools Web: A user-friendly interface for the manipulation of PDB files", (in preparation).
  2. Rodrigues, J. P. G. L. M., Teixeira, J. M. C., Trellet, M. and Bonvin, A. M. J. J. "pdb-tools: a swiss army knife for molecular structures", F1000Research 2018, 7:1961 (https://doi.org/10.12688/f1000research.17456.1).

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Results:

Result #1
cloud_download output_1_0.pdb

Command
$ cat parsed_1_A.pdb | pdb_delhetatm.py | pdb_delelem.py -H
Result #2
cloud_download output_1_1.pdb

Command
$ cat parsed_1_H.pdb | pdb_delhetatm.py | pdb_delelem.py -H
Result #3
cloud_download output_1_2.pdb

Command
$ cat parsed_1_L.pdb | pdb_delhetatm.py | pdb_delelem.py -H
Result #4
cloud_download merged_1.pdb

Command
$ pdb_merge.py parsed_1_A.pdb parsed_1_H.pdb parsed_1_L.pdb
Final Output
cloud_download output_merged_1.pdb

Command
$ cat merged_1.pdb | pdb_tidy.py
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